Is a memory a bunch of atoms? And does this mean we can transfer exact memories?

I was asked the following question on Quora.

Are specific memories just arrangements of atoms in our brains? Could you put certain molecules in someones head and give them an exact memory that you had?

Short answer: No.

Modern science has shown that every thing is an arrangement of atoms: neurons, apples, tables, rockets, asteroids, aardvarks… they are all made up of atoms.

The question now is this: is a memory a thing?

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Are mental disorders the same as brain disorders? Maybe not!

I am currently reading an excellent paper that will be published in Behavioral and Brain Sciences soon. It raises some very important issues with popular conceptions of mental illness.

Brain disorders? Not really… Why network structures block reductionism in psychopathology research

These two figures capture some of the key points:

Here is the abstract:

“In the past decades, reductionism has dominated both research directions and funding policies in clinical psychology and psychiatry. However, the intense search for the biological basis of mental disorders has not resulted in conclusive reductionist explanations of psychopathology. Recently, network models have been proposed as an alternative framework for the analysis of mental disorders, in which mental disorders arise from the causal interplay between symptoms. In this paper, we show that this conceptualization can help understand why reductionist approaches in psychiatry and clinical psychology are on the wrong track. First, symptom networks preclude the identification of a common cause of symptomatology with a neurobiological condition, because in symptom networks there is no such common cause. Second, symptom network relations depend on the content of mental states and as such feature intentionality. Third, the strength of network relations is highly likely to partially depend on cultural and historical contexts as well as external mechanisms in the environment. Taken together, these properties suggest that, if mental disorders are indeed networks of causally related symptoms, reductionist accounts cannot achieve the level of success associated with reductionist disease models in modern medicine. As an alternative strategy, we propose to interpret network structures in terms of D. C. Dennett’s (1987) notion of real patterns, and suggest that, instead of being reducible to a biological basis, mental disorders feature biological and psychological factors that are deeply intertwined in feedback loops. This suggests that neither psychological nor biological levels can claim causal or explanatory priority, and that a holistic research strategy is necessary for progress in the study of mental disorders.”

Behavioral and Brain Sciences is one of the premier journals for “big thinking” in cognitive science and neuroscience, so it’s great to see these ideas there.

Why can’t we perceive cells? Or atoms?

I was asked the following question on Quora:

Why can’t we see, touch, hear and smell on a cellular level? And what happens if we can?

Here’s what I wrote:

Essentially, we perceive the visible world in the way that we do because of our overall size, the shape of our eyes, and the sizes of objects in the world that are relevant to our voluntary behavior.

This question might seem silly, but a closely related question can serve as a springboard for us to think very deeply about physical scale, and how it relates to biological life and to the very concept of a scientific law.

But first lets deal with the basic question.

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Is the mind a machine?

My latest 3QD essay explores the “mind as machine” metaphor, and metaphors in general.

Putting the “cog” in “cognitive”: on the “mind as machine” metaphor

Here’s an excerpt:

People who study the mind and brain often confront the limits of metaphor. In the essay ‘Brain Metaphor and Brain Theory‘, the vision scientist John Daugman draws our attention to the fact that thinkers throughout history have used the latest material technology as a model for the mind and body. In the Katha Upanishad (which Daugman doesn’t mention), the body is a chariot and the mind is the reins. For the pre-Socratic Greeks, hydraulic metaphors for the psyche were popular: imbalances in the four humors produced particular moods and dispositions. By the 18th and 19th centuries, mechanical metaphors predominated in western thinking: the mind worked like clockwork. The machine metaphor has remained with us in some form or the other since the industrial revolution: for many contemporary scientists and philosophers, the only debate seems to be about what sort of machine the mind really is. Is it an electrical circuit? A cybernetic feedback device? A computing machine that manipulates abstract symbols? Some thinkers so convinced that the mind is a computer that they invite us to abandon the notion that the idea is a metaphor. Daugman quotes the cogntive scientist Zenon Pylyshyn, who claimed that “there is no reason why computation ought to be treated merely as a metaphor for cognition, as opposed to the literal nature of cognition”.

Daugman reacts to this Whiggish attitude with a confession of incredulity that many of us can relate to: “who among us finds any recognizable strand of their personhood or of their experience of others and of the world and its passions, to be significantly illuminated by, or distilled in, the metaphor of computation?.” He concludes his essay with the suggestion that “[w]e should remember than the enthusiastically embraced metaphors of each “new era” can become, like their predecessors, as much the prisonhouse of thought as they at first appeared to represent its liberation.”

Read the rest at 3 Quarks Daily:

Putting the “cog” in “cognitive”: on the “mind as machine” metaphor

Why an organism is not a “machine”

I just came across a nice article explaining why the metaphor of organism as machine is misleading and unhelpful.

The machine conception of the organism in development and evolution: A critical analysis

This excerpt makes a key point:

“Although both organisms and machines operate towards the attainment of particular ends that is, both are purposive systems the former are intrinsically purposive whereas the latter are extrinsically purposive. A machine is extrinsically purposive in the sense that it works towards an end that is external to itself; that is, it does not serve its own interests but those of its maker or user. An organism, on the other hand, is intrinsically purposive in the sense that its activities are directed towards the maintenance of its own organization; that is, it acts on its own behalf.”

In this section the author explains how the software/hardware idea found its way into developmental biology.

“The situation changed considerably in the mid-twentieth century with the advent of modern computing and the introduction of the conceptual distinction between software and hardware. This theoretical innovation enabled the construction of a new kind of machine, the computer, which contains algorithmic sequences of coded instructions or programs that are executed by a central processing unit. In a computer, the software is totally independent from the hardware that runs it. A program can be transferred from one computer and run in another. Moreover, the execution of a program is always carried out in exactly the same fashion, regardless of the number of times it is run and of the hardware that runs it. The computer is thus a machine with Cartesian and Laplacian overtones. It is Cartesian because the software/hardware distinction echoes the soul/body dualism: the computer has an immaterial ‘soul’ (the software) that governs the operations of a material ‘body’ (the hardware). And it is Laplacian because the execution of a program is completely deterministic and fully predictable, at least in principle. These and other features made the computer a very attractive theoretical model for those concerned with elucidating the role of genes in development in the early days of molecular biology.”

The machine conception of the organism in development and evolution: A critical analysis

I’ve actually criticized the genetic program metaphor myself, in the following 3QD essay:

3quarksdaily: How informative is the concept of biological information?


Image source: Digesting Duck – Wikipedia

“Conscious realism”: a new way to think about reality (or the lack thereof?)


Interesting interview in the Atlantic with cognitive scientist Donald D. Hoffman:

The Case Against Reality

“I call it conscious realism: Objective reality is just conscious agents, just points of view. Interestingly, I can take two conscious agents and have them interact, and the mathematical structure of that interaction also satisfies the definition of a conscious agent. This mathematics is telling me something. I can take two minds, and they can generate a new, unified single mind. Here’s a concrete example. We have two hemispheres in our brain. But when you do a split-brain operation, a complete transection of the corpus callosum, you get clear evidence of two separate consciousnesses. Before that slicing happened, it seemed there was a single unified consciousness. So it’s not implausible that there is a single conscious agent. And yet it’s also the case that there are two conscious agents there, and you can see that when they’re split. I didn’t expect that, the mathematics forced me to recognize this. It suggests that I can take separate observers, put them together and create new observers, and keep doing this ad infinitum. It’s conscious agents all the way down.”


Here’s the striking thing about that. I can pull the W out of the model and stick a conscious agent in its place and get a circuit of conscious agents. In fact, you can have whole networks of arbitrary complexity. And that’s the world.


“As a conscious realist, I am postulating conscious experiences as ontological primitives, the most basic ingredients of the world. I’m claiming that experiences are the real coin of the realm. The experiences of everyday life—my real feeling of a headache, my real taste of chocolate—that really is the ultimate nature of reality.”

I don’t agree with everything in the article (especially the quantum stuff) but I think many people interested in consciousness and metaphysics will find plenty of food for thought here:

The Case Against Reality

Also, the “conscious agents all the way down” is the exact position I was criticizing in a recent 3QD essay:

3quarksdaily: Persons all the way down: On viewing the scientific conception of the self from the inside out

The diagram above is from a science fiction story I was working on, back when I was a callow youth. It closely related to the idea of a network of conscious agents. Here’s another ‘version’ of it.


Not sure why I made it look so morbid. 🙂

Where do thoughts come from?

Here’s my answer to a recent Quora question: Where do our thoughts come from?

Thoughts come from nowhere! And from everywhere! I think both answers contain an element of truth.

Subjectively, our thoughts come from nowhere: they just pop into our heads, or emerge in the form of words leaving our mouths.

Objectively, we can say that thoughts emerge from neural processes, and that neural processes come from everywhere. What I mean by this is that the forms and dynamics of thought are influenced by everything that has a causal connection with you, your society, and your species.

We don’t know exactly how thoughts emerge from the activity of neurons — or even how to define what a thought is in biological terms (!)— but there is plenty of indirect evidence to support the general claim that the brain is where thoughts emerge.

The neuronal patterns that mediate and enable thought and behavior have proximal and distal causes.

The proximal causes are the stimuli and circumstances we experience. These experiences have causal impacts on our bodies, and are also partly caused by our bodies. The forces inside and outside the body become manifest in the brain as ‘clouds’ of information. In the right circumstances these nebulous patterns can condense into streams of thought. We can add to these identifiable causes the mysterious element of randomness: that seemingly ever-present “ghost in the machine” that makes complex processes such as life fundamentally unpredictable. Perhaps randomness is what provides the ‘seeds’ around which the condensation of thoughts can occur.

The distal causes are our experiential history and our evolutionary pre-history. Our experiential history consists of the things we’ve learned, consciously and unconsciously, and the various events that have shaped our bodies and our neural connections in large and small ways. Our evolutionary pre-history is essentially the experiential history of our species, and more generally of life itself, going back all the way to the first single-celled organism. The traits of a species are a sort of historical record of successes and failures. And going even further, life ultimately takes its particular forms because of the possibilities inherent in matter — and this takes us all the way to the formation of stars and planets.